PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF042100080CFD_t1
Common NameTRAES_3BF042100080CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 678aa    MW: 73138.4 Da    PI: 5.1676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF042100080CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06413434426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              +lC+f++  G C+ G+ CkF+H+
  TRAES3BF042100080CFD_t1 413 KLCHFYMH-GKCQQGNACKFSHD 434
                              79**8888.*************7 PP

2zf-CCCH18.14.9e-06440462225
                              -S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                              k ++C +far G C  Gd C++ H
  TRAES3BF042100080CFD_t1 440 KSKPCTHFAR-GSCLKGDDCPYDH 462
                              6789******.************* PP

3zf-CCCH222.9e-07468489526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f ++G C +Gd+CkF+H+
  TRAES3BF042100080CFD_t1 468 PCHNFVENGMCFRGDKCKFSHV 489
                              7********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187409436IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072410435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6410434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4437463IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5438464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281438465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5440463IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037466490IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5467490IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864468491IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4468489IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4468488IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MEDSLVPPVP PAPTTLFLTR RRSHLDSASY RTLSRLFSHC LHHRPSQLAA PAPLEVEPAA  60
ANPICDESPQ GCSVPPGRGK DLGEEETAVR TSVIENPSPA AVDAATGNPI ADPAVAPQRY  120
MENQVAGVQR VEGVTDMVVG GNVCRETVAF VEELGAEDVL RSMKDCLEGE VDELAEPDVV  180
VVNDDEHLLL DTMMTNFSGL IADASGGTTS MLNYGVSGGE PHNDGNIAEG VKELGAGTEE  240
DRPVGGLDQH SVDGGVVEEG EIEGDMQALD VDESDDSELE DADDEELEED FTNRVLGENE  300
SSGQDIPCLN LLSTPKTKGT SDLVLNKEGY IKDDALKHVT RAQAVSYDEI VEWNETPLPD  360
AEAPKLGKRK RHLTEERKAK KTKNKRVKRA QQRIADGVKR LKLAPVIKPK PVKLCHFYMH  420
GKCQQGNACK FSHDTTPLTK SKPCTHFARG SCLKGDDCPY DHELSKYPCH NFVENGMCFR  480
GDKCKFSHVV PTADGPSKPD AKKSDASLVS EKPGREQTSS QKASTVHDGE RVTSAPTKHY  540
SILKNLAGIS VNALKASTST PKGVQFRPSS KDRSNSSMLH QDALTIEKHM YTNGSKHQNF  600
GGPQAEEGDK NVSPNKQRSA PLLDEKNSSK EASSHPSSDP KGTSLPTGST TVLGSLSTQH  660
EVSEASRILQ EFLFGAGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569232.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010231934.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010231935.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLW5CXU70.0W5CXU7_WHEAT; Uncharacterized protein
STRINGMLOC_52106.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-07C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]